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- Thigmation
- Thusu, 1973b
- Thylakoid
- Timpano and Pfiester, 1985a
- Timpano and Pfiester, 1985b
- Tournover, 1869
- Toxicyst
- Trabecula
- Trabeculae
- Transitional cingular plate
- Transitional sulcal plate
- Transverse flagella
- Traverse, 1998
- Tremic archeopyle
- Tres
- Trevisan, 1848
- Triple-membraned envelope
- Trouessart, 1901
- Tubular crista
- Tubular cristae
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- Uniflagellate
- Unos
- Van Oyen, 1964
- Vela
- Velum
- Ventral organization
- Villi
- Villus
- Volkova, 1988
- Voltz, 1837
- Von Hoehnel, 1911
- Vrba, 1980
- Wall, 1967b
- Wall, 1971
- Wall and Evitt, 1975
- Walton, 1931
- Warming, 1890
- Weiler, 1982
- West and Fritsch, 1927
- Wharton, 1988
- Wicander, 1983
- Wille, 1982
- Williams, 1977
- Williams et al., 1978
- Williams et al., 1992
- Williamson, 1848
- Woloszynska, 1917
- Wolters, 1991
- Wrenn and Damassa, 1989